Examples

Simple:

bakta --db <db-path> genome.fasta

Expert: verbose output writing results to results directory with ecoli123 file prefix and eco634 locus tag using an existing prodigal training file, using additional replicon information and 8 threads:

bakta --db <db-path> --verbose --output results/ --prefix ecoli123 --locus-tag eco634 --prodigal-tf eco.tf --replicons replicon.tsv --threads 8 genome.fasta